Reslice Module

The reslice module is used to reslice images from individual into atlas space. Currently, the normalization needs to be done using the MATLAB version of the [SUIT toolbox]. We assume that you have run suit_normalize_dartel.m [see here for documentation]. The reslice module requires the result of the normalization step as a non-linear deformation file. In Matlab you can produce this file using the following command:

suit_save_darteldef(<name>, 'wdir',<dir>)

Where <name> is the name of the original anatomical and dir the suit working directory (defaults to current directory). This function produces y_<name>_suitdef.nii as an output.

This file can then be used in SUITPy to reslice anatomical and functional images into atlas space.

• Re-slicing
  • Reslice image without mask
  • Reslice image with mask
  • Specific voxel size
  • Specify output dimensions and affine transformation